MOESM3 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

Additional file 3: Table S2. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the KMS time-course. File with lists of genes from each cluster from the KMS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for Zn2Cys6 transcription factors that met selection criteria. Only genes strongly associated with a cluster’s predominant expression profile (membership value > 0.5 as well as an FPKM > 10 at the cluster’s expression peak) were selected which led to the capture of between a half and a third of each category.

附加文件3：表S2。该表格展示了KMS时间进程中MFuzz聚类的碳水化合物活性酶（CAZy）、转录因子及糖转运蛋白的分布情况。本文件包含符合筛选标准的相关基因的KMS时间进程各聚类分组列表，涉及的基因类别包括CAZy家族基因、经蛋白质家族（Pfam）数据库注释的糖转运蛋白编码基因，以及经Pfam数据库注释的Zn2Cys6型转录因子编码基因。本次分析仅选取与聚类主导表达谱强相关的基因：即隶属度值大于0.5，且在该聚类的表达峰值处的每百万片段转录本数（FPKM）大于10的基因，最终每个类别中约有一半至三分之一的基因被纳入研究。