Phalaenopsis aphrodite LTRharvest consensus sequences with 2-ODD domain

LTRharvest predictions were clustered on a similarity basis and the sequences from each cluster were aligned to derive consensus sequences. Following this approach, we obtained 254 and 178 consensus from the P. aphrodite and P. equestris genome assemblies, respectively. After searching for conserved protein domains across these sequences, we identified 15 consensus encoding the 2-ODD domain in P. aphrodite.

基于相似性对LTRharvest的预测结果进行聚类，随后对每个聚类内的序列开展多序列比对以推导共有序列（consensus sequences）。按照该分析流程，我们分别从P. aphrodite和P. equestris的基因组组装结果中获得254条与178条共有序列。在对上述序列进行保守蛋白质结构域检索后，我们在P. aphrodite中鉴定出15条编码2-ODD结构域的共有序列。