Data accompanying MetaChrom and "Annotating functional effects of non-coding variants in neuropsychiatric cell types by Deep Transfer Learning"

This is the data accompanying the paper " Annotating functional effects of non-coding variants in neuropsychiatric cell types by Deep Transfer Learning" and the GitHub repository https://github.com/bl-2633/MetaChrom. <strong>/data/bed_files/ </strong>contains the unprocessed bed file used in analysis <strong>/data/seq_data/</strong> contains processed data from the bed files with corresponding partition and labels for each sequence segment. <strong>/trained_model/MetaChrom_model/</strong> contains the pre-trained MetaChrom model on neural developmental context <strong>/trained_models/MetaFeat_model/ </strong>contains the MetaFeat model used in training <strong>/tool/</strong> contains files and software necessary for the processing pipeline.本数据集配套于论文《基于深度迁移学习注释神经精神细胞类型中非编码变异的功能效应》及GitHub仓库https://github.com/bl-2633/MetaChrom。其中，**/data/bed_files/** 存放本次分析所用的未预处理BED格式文件；**/data/seq_data/** 存放由BED文件预处理得到的序列数据，包含各序列片段的对应分区信息与标签；**/trained_model/MetaChrom_model/** 存放基于神经发育背景预训练的MetaChrom模型；**/trained_models/MetaFeat_model/** 存放训练流程中使用的MetaFeat模型；**/tool/** 存放数据处理流程所需的各类文件与软件工具。