non-exclusive-alpha-helices-all-alpha-proteins
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https://figshare.com/articles/non-exclusive-alpha-helices-all-alpha-proteins/6638945/2
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资源简介:
Dataset containing physical-chemical and strucutural descriptors for non-exclusive alpha helices and its flanking regions. <br>Only alpha helices from <b>all-alpha proteins</b> are eligible for this dataset.<br>Data is organized into sections. Each section begins with the following header: <b>length, pdb_name, chain_id, flag, position, [parameter</b>].<br><b>length </b>is the number of amino acid residues comprising the alpha helix.<br><b>flag </b>indicates the amino acid residue underlying region, namely: flanking region before the alpha helix (<b><</b>); alpha helix (<b>=</b>); flanking region after the alpha helix (<b>></b>).<br><b>[parameter]</b>: paramater's value for the given amino acid residue. All parameters are extracted from the STING Database.<br><b>Example:</b><b>Solvent-accessible surface area for all amino acid residues forming an alpha helix of length 5</b><br>length, pdb_name, chain_id, flag, position, Acessible_Surface_in_Isolation5,1all,A,=,1,66.1625,1all,A,=,2,81.3985,1all,A,=,3,11.9495,1all,A,=,4,22.165,1all,A,=,5,77.672
本数据集收录非专属α螺旋(alpha helix)及其侧翼区域的理化与结构描述符。本数据集仅选取全α蛋白(all-alpha proteins)中的α螺旋。
数据以章节形式组织,每个章节均以如下表头起始:**长度(length)、pdb_name、链ID(chain_id)、标记(flag)、位置(position)、[参数(parameter)]**。
**长度(length)**:构成该α螺旋的氨基酸残基总数。
**标记(flag)**:用于指示对应氨基酸残基所属区域,具体规则如下:α螺旋前侧翼区域(**<**);α螺旋区域(**=**);α螺旋后侧翼区域(**>**)。
**[参数(parameter)]**:给定氨基酸残基的参数值,所有参数均提取自STING数据库(STING Database)。
**示例:长度为5的α螺旋所有氨基酸残基的溶剂可及表面积(Solvent-accessible surface area)**
length, pdb_name, chain_id, flag, position, Acessible_Surface_in_Isolation5,1all,A,=,1,66.1625,1all,A,=,2,81.3985,1all,A,=,3,11.9495,1all,A,=,4,22.165,1all,A,=,5,77.672
提供机构:
figshare
创建时间:
2018-06-21



