Identification of spatial compartments in tissue from in situ sequencing data

Example data [1] for testing in situ sequencing graph-based decoding pipeline and decoding results for reproducing publication analyses. Image decoding pipeline and notebooks are available at: https://github.com/wahlby-lab/graph-iss ------------ [1] Ke, Rongqin, et al. "In situ sequencing for RNA analysis in preserved tissue and cells." <em>Nature methods</em> 10.9 (2013): 857.本数据集为用于测试基于图的原位测序（in situ sequencing）解码流程的示例数据[1]，同时包含可复现该已发表论文分析结果的解码结果。图像解码流程及配套Jupyter笔记本可从以下网址获取：https://github.com/wahlby-lab/graph-iss [1] Ke, Rongqin 等：《用于固定组织与细胞内RNA分析的原位测序》，《自然·方法学》（*Nature Methods*），2013年，第10卷第9期，第857页。