Test data for running snakePipes : WGBS workflow

<strong>Test files for running snakePipes workflows</strong> <strong>snakePipes</strong> are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to this link for further information on snakePipes. This folder contains test files that can be used to run the WGBS workflow under snakePipes. To test the workflow, follow the following steps : Download or prepare genome fasta, indices and annotations for the mouse (<strong>GRCm38</strong>) genome. Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes` Update Genome configuration file with path to indices and annotations. Move to this repository and run the example <strong>command.sh</strong>**用于运行snakePipes工作流的测试文件** **snakePipes**是基于Snakemake和Python构建的表观基因组数据集分析工作流。如需了解snakePipes的更多信息，请参阅此链接。 此文件夹包含可用于在snakePipes中运行全基因组亚硫酸氢盐测序（Whole Genome Bisulfite Sequencing, WGBS）工作流的测试文件。如需测试该工作流，请遵循以下步骤： 1. 下载或准备小鼠（GRCm38）基因组的基因组FASTA文件、索引文件及注释文件。 2. 通过命令`conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`下载并安装snakePipes。 3. 更新基因组配置文件，填入索引文件与注释文件的路径。 4. 进入此代码仓库目录，运行示例脚本`command.sh`。