Additional file 1 of In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1

Additional file 1. Herbaspirillum seropedicae SmR1 predicted sRNAs. Expression of the 117 sRNAs of H. seropedicae SmR1 are shown in the table by Coverage and RPKM using RNA-seq data under CRT, NAR and NIT conditions. Defined identity sRNAs have the Rfam code listed. All sRNAs have features as the tools by which the sRNA was predicted (nocoRNAc and / or Cufflinks), category (trans-encoded, cis-encoded or riboswitch), percentage of G + C in the sRNA sequence, initial and final position of the sRNA found in the genome of H. seropedicae SmR1 as well as the sense of the DNA strand (sense or antisense) and the size of the sRNA.补充材料1：解淀粉草螺菌（Herbaspirillum seropedicae）SmR1菌株的预测小RNA（sRNA）。本表格基于CRT、NAR及NIT三种培养条件下的RNA测序（RNA-seq）数据，以覆盖度（Coverage）与每百万读段每千碱基转录本数（RPKM）为指标，展示了该菌株117个小RNA的表达水平。经明确鉴定的小RNA会标注其Rfam编号。所有小RNA均包含如下注释信息：预测所用的生物信息学工具（nocoRNAc和/或Cufflinks）、分类类别（反式编码、顺式编码或核糖开关）、小RNA序列的G+C碱基百分含量、在解淀粉草螺菌SmR1基因组中的起始与终止位置、DNA链的方向（有义链或反义链）以及小RNA的长度。