Additional file 1 of Kazakh Tobet dogs in the genomic landscape: refining the history of livestock guardian breeds

Additional file 1: Table S1 SNP-based genetic variability in LGD breeds. Table S2 Introgression events among LGD breeds based on D-statistics. Table S3 FROH of Kazakh Tobet dogs. Table S4 Annotation of SNP identified in ROH, iHS and nSL tests. Table S5 Characterization of genes with known functional significance identified in ROH, iHS and nSL tests. Table S6 GO and KEGG annotation of genes identified in ROH, iHS and nSL tests. Table S7 Kazakh Tobet sample data. Table S8 Sample distribution by dataset. Table S9 Geographic origin of LGDand non-LGD breeds. Table S10 Sample Information: FID, IID and source

附加文件1：表S1 基于单核苷酸多态性（Single Nucleotide Polymorphism, SNP）的畜牧护卫犬（Livestock Guardian Dog, LGD）品种的遗传变异情况；表S2 基于D统计量（D-statistics）的LGD品种间基因渐渗事件；表S3 哈萨克托贝特犬的连续纯合子区域近交系数（FROH, runs of homozygosity）；表S4 对在连续纯合子区域（ROH）、整合单倍型得分（iHS, integrated haplotype score）和标准化单倍型纯合性长度得分（nSL, normalized haplotype homozygosity score）分析中检测到的SNP的注释信息；表S5 对在ROH、iHS和nSL分析中检测到的具有已知功能重要性的基因的特征描述；表S6 对在ROH、iHS和nSL分析中检测到的基因的基因本体（Gene Ontology, GO）和京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes, KEGG）注释信息；表S7 哈萨克托贝特犬样本数据；表S8 按数据集分组的样本分布情况；表S9 LGD品种与非LGD品种的地理起源信息；表S10 样本信息：家系ID（FID）、个体ID（IID）及样本来源