Additional file 2: Table S1. of High-throughput sequencing of pituitary and hypothalamic microRNA transcriptome associated with high rate of egg production
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The main reproductive traits of the selected LP and HP samples. Table S2. Primer sequences for real-time PCR validation and SNP detection. Table S3. Overview of miRNA-seq data of all samples. Table S4. Identities of various RNA sequences in pituitary and hypothalamic tissues. Table S5. Expression profile of known miRNAs in pituitary and hypothalamic tissues of low- and high-rate egg production chickens. Table S6. Novel miRNAs expressed in pituitary and hypothalamus tissues of low- and high-rate egg production chickens. Table S7. The distribution of miRNA pairs in pituitary and hypothalamic tissues. Table S8. Differentially expressed miRNAs between low- and high-rate egg production chickens in pituitary and hypothalamic tissues. Table S9. The prediction of the differentially expressed miRNA targets in pituitary and hypothalamic tissues. Table S10. GO and KEGG pathway annotations for the miRNA targets in pituitary and hypothalamic tissues. Table S11. miRNAs and their predicted target genes involved in the regulation processes of reproduction. Table S12. Differentially expressed genes between low- and high-rate egg production chickens in pituitary and hypothalamic tissues. Table S13. The predicted miRNA-target pairs that are differentially and reciprocally expressed in pituitary and hypothalamic tissues. Table S14. The haplotype distribution and sequence variations in the selected miRNA precursors. (XLSX 1731Â kb)
所选低产蛋率（LP）与高产蛋率（HP）样本的主要繁殖性状。 表S2：实时荧光定量PCR（real-time PCR）验证及单核苷酸多态性（Single Nucleotide Polymorphism，SNP）检测所用引物序列 表S3：所有样本的微小RNA测序（miRNA-seq）数据概况 表S4：垂体与下丘脑组织中各类RNA序列的同源性信息 表S5：低、高产蛋率鸡垂体与下丘脑组织中已知微小RNA（miRNA）的表达谱 表S6：低、高产蛋率鸡垂体与下丘脑组织中表达的新型微小RNA 表S7：垂体与下丘脑组织中微小RNA对的分布情况 表S8：低、高产蛋率鸡垂体与下丘脑组织中差异表达的微小RNA 表S9：垂体与下丘脑组织中差异表达微小RNA的靶基因预测结果 表S10：垂体与下丘脑组织中微小RNA靶基因的基因本体（Gene Ontology，GO）及京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes，KEGG）通路注释信息 表S11：参与繁殖调控过程的微小RNA及其预测靶基因 表S12：低、高产蛋率鸡垂体与下丘脑组织中差异表达的基因 表S13：垂体与下丘脑组织中差异表达且呈反向调控关系的微小RNA-靶基因对预测结果 表S14：所选微小RNA前体的单倍型分布及序列变异情况 （Excel表格，大小1731 KB）
