Reference files for TE analysis (v1.1)
收藏Figshare2022-03-22 更新2026-04-28 收录
下载链接：
https://figshare.com/articles/dataset/Reference_files_for_TE_analysis_v1_1_/19394723
下载链接
链接失效反馈官方服务：
资源简介：
README - Transposable Element Differential Expression Analysis Protocol from RNA-seq Data###########################Supplied reference files- Reference genome sequence, predicted RNA sequences and genome annotations (GCA_014300015.1; 2020 genome) These files are publicly available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599375/ GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna GCA_014300015.1_MPIA_NFZ_2.0_genomic.gtf GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic.fna- FishTEDB sequences for N. furzeri transposons This file can be obtained at: http://www.fishtedb.org/project/species-detail?species=Nothobranchius+furzeriNothobranchius_furzeri_FishTEDB_TEs.fa- Modified reference files including TE sequences/annotations for* kallisto/transcriptome based method:GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic_WithFishTEDBv4.fasta* STAR/genome based method:GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna.maskedGCA_014300015.1_MPIA_NFZ_2.0_gene_and_RepeatMasker_FishTEDB_annotations.gtfGCA_014300015.1_MPIA_NFZ_2.0_genomic.fna.out
创建时间：
2022-03-22
