SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 9)
收藏Mendeley Data2024-01-31 更新2024-06-27 收录
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http://datadryad.org/resource/doi:10.5061/dryad.jn630/14
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资源简介:
This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
本数据集包含148只采自肯尼亚、非洲及欧亚大陆的蜜蜂中检出的1300余万个单核苷酸多态性(Single Nucleotide Polymorphism, SNP),这些位点经FreeBayes软件检测且通过质量过滤。单核苷酸多态性(SNP)的处理流程、样本标签设置及质量控制细节已在该论文及其补充材料中详细说明。原始输入文件148_honeybees.vcf.gz已被拆分为14个带编号的分块文件(编号0至13)。下载所有分块文件后,可通过以下UNIX命令拼接还原为原始文件:`cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz`。随后可通过UNIX命令`gunzip 148_honeybees.vcf.gz`对该变异调用格式(Variant Call Format, VCF)文件进行解压缩。
创建时间:
2024-01-31



