Supp_Tables1-4
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Supplementary Tables for manuscript:<br>Table S1. Functional annotations and corresponding sequences for the genomes of (A-C) Ca. E. dacicola – three available assemblies, (D) Tatumella sp. TA1 and (E) Enterobacter sp. OLF, as well as for (F) the transcriptome of Ca. E. dacicola (ribosomal RNAs excluded). The annotations come from RAST subsystems.<br>Table S2. GenBank accession numbers and metadata for sequences used in phylogenetic analyses. (A) Whole genome sequences used for ortholog picking and phylogenetic reconstruction of the species and reference trees (B) Amino acid sequences used for the ureC gene tree.<br>Table S3. Presence and expression of genes related to nitrogen assimilation in Ca. E. dacicola and Tatumella sp. TA1. (A) Urea hydrolysis and nitrogen recycling pathways (B) Amino acid biosynthetic pathways.<br>Table S4. Functional annotation of (A-C) Ca. E. dacicola - three available assemblies, (D) Tatumella sp. TA1 and (E) Enterobacter sp. OLF genomes for extracellular surface structure components, by assignment of genes to the KEGG category “Membrane Transport” using RAST subsystems.<br><br><b>Functional genomics of a symbiotic community: shared traits in the olive fruit fly gut microbiota</b> Frances Blow<sup>1,2</sup>, Anastasia Gioti<sup>3*</sup>, Ian B. Goodhead<sup>1,4</sup>, Maria Kalyva<sup>3,5</sup>Anastasia Kampouraki<sup>6,7</sup>, John Vontas<sup>6,7</sup>, Alistair C. Darby<sup>1*</sup>
论文补充表： 表S1。（A-C）候选*Ca. E. dacicola*的3套可获得基因组组装结果、（D）*塔特姆氏菌属（Tatumella）* sp. TA1以及（E）*肠杆菌属（Enterobacter）* sp. OLF的基因组，外加（F）候选*Ca. E. dacicola*的转录组（已剔除核糖体RNA）的功能注释信息与对应序列。上述注释均源自RAST子系统（RAST subsystems）。 表S2。系统发育分析所用序列的基因库（GenBank）登录号与元数据。其中（A）为用于直系同源基因筛选、物种系统发育重建及参考树构建的全基因组序列；（B）为用于构建*ureC*基因进化树的氨基酸序列。 表S3。候选*Ca. E. dacicola*与*塔特姆氏菌属（Tatumella）* sp. TA1中与氮同化相关的基因存在情况及表达水平。（A）尿素水解与氮循环通路；（B）氨基酸生物合成通路。 表S4。通过RAST子系统（RAST subsystems）将基因归类至京都基因与基因组百科全书（KEGG）“膜转运”类别后，得到（A-C）候选*Ca. E. dacicola*的3套可获得基因组组装结果、（D）*塔特姆氏菌属（Tatumella）* sp. TA1以及（E）*肠杆菌属（Enterobacter）* sp. OLF的基因组中细胞外表面结构组分相关基因的功能注释。 **共生群落的功能基因组学：橄榄实蝇肠道菌群的共有特征** 作者：Frances Blow<sup>1,2</sup>、Anastasia Gioti<sup>3*</sup>、Ian B. Goodhead<sup>1,4</sup>、Maria Kalyva<sup>3,5</sup>、Anastasia Kampouraki<sup>6,7</sup>、John Vontas<sup>6,7</sup>、Alistair C. Darby<sup>1*</sup>
