Testing species boundaries in Polylepis

Here you will find raw files to test species boundaries in Polylepis using SNP only dataset called using dDocent. The vcf file contains the 15154 unliked SNPs. The gl.nex and gl.phy are inputs for phylogenetic analyses while the genpofad_for_splitree.phy is the distance matrix for network analyses. The .R files are used to conduct population genetic analyses, and generate input files for phylogenetic and network analyses, and to validate ADMIXTURE results. The .sh files are SLURM scripts and are numbered according to order of application.本数据集包含用于借助仅基于单核苷酸多态性（Single Nucleotide Polymorphism, SNP）的数据集检验多蕊木属（Polylepis）物种边界的原始文件，该数据集通过dDocent软件完成基因型调用。其中VCF文件（Variant Call Format）包含15154个未连锁的单核苷酸多态性位点。gl.nex与gl.phy文件可作为系统发育分析的输入文件，而genpofad_for_splitree.phy文件则为网络分析所用的距离矩阵。.R格式的R脚本文件可用于开展群体遗传学分析、生成系统发育与网络分析所需的输入文件，以及验证ADMIXTURE软件的分析结果。.sh格式的SLURM脚本文件已按照实际运行顺序完成编号。