five

Genomic data of Nanmaohu Park vascular plant specimen, RL1039

收藏
DataCite Commons2025-05-26 更新2026-05-03 收录
下载链接:
http://gigadb.org/dataset/102102
下载链接
链接失效反馈
官方服务:
资源简介:
We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001954. Preliminary identification is that it is of the family Urticaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 485813000bp. We have generated 48560000000bp of data, which gives a theoretical coverage of 100x.

本研究于中国云南省瑞丽植物园开展维管植物(vascular plants)样本采集工作。所有采样区域的地理坐标范围为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔区间为740米至1200米。本次共收集1093份维管植物样本,采集幼叶用于基因组测序,同步制作凭证标本(voucher specimen);所有标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。 其中761份样本的DNA质量符合测序标准,剩余332份仅完成凭证标本制作,相关植物图像已收录于本数据集。上述761份合格样本分属49个目、137个科,共计689个维管植物物种。 目前课题组仍在推进所有标本的正式分类鉴定工作,但截至论文发表时,仅极少数样本可鉴定至科以上分类阶元。 本数据集包含凭证标本编号为HCNGB:RUILI:HCNGB_00001954的植物的基因组数据与配套图像;经初步分类鉴定,该样本隶属于荨麻科(Urticaceae)。 通过对测序数据进行K-mer分布分析,预测该植物的基因组大小为485813000bp;本次测序共生成48560000000bp的原始数据,理论测序覆盖度达100倍。
提供机构:
GigaScience Database
创建时间:
2019-01-24
二维码
社区交流群
二维码
科研交流群
商业服务