Supplementary Files – Dissecting the genomic regions that underpin the genetic correlations between production, fertility, and urea traits

Supplementary File 1. The number of windows, chromosome number, chromosome coordinates, local correlation estimates, pvalues and status of each window for production vs fertility trait pairs (Table S1-S3). Supplementary File 2. The chromosome number and chromosome coordinates of windows consistently tagged as drivers across production vs fertility trait pairs (Table S4). Supplementary File 3. The QTL enriched for the driver regions for production vs fertility trait pairs (Table S5). Supplementary File 4. The chromosome number and chromosome coordinates of windows consistently tagged as antagonizers across production vs fertility trait pairs (Table S6) Supplementary File 5. The genome-wide plots of the meta-analysis (two-trait and multi-trait) and the QTL enrichment between the production and fertility trait pairs (Figure S1-S3) Supplementary File 6. The number of windows, chromosome number, chromosome coordinates, local correlation estimates, pvalues and status of each window for urea vs fertility trait pairs (Table S7-S8) Supplementary File 7. The chromosome number and chromosome coordinates of windows consistently tagged as drivers across urea vs fertility trait pairs (Table S9). Supplementary File 8. The QTL enriched for the driver regions for urea vs fertility trait pairs (Table S10). Supplementary File 9. The chromosome number and chromosome coordinates of windows consistently tagged as antagonizers across urea vs fertility trait pairs (Table S11) Supplementary File 10. The QTL enriched for the antagonizer regions for urea vs fertility trait pairs (Table S12). Supplementary File 11. The genome-wide plots of the meta-analysis (two-trait and multi-trait) and the QTL enrichment between urea and fertility trait pairs (Figure S4-S6) Supplementary File 12. The number of windows, chromosome number, chromosome coordinates, local correlation estimates, pvalues and status of each window for urea vs production trait pairs (Table S13-S18). Supplementary File 13. The chromosome number and chromosome coordinates of windows consistently tagged as drivers across urea vs production trait pairs (Table S19). Supplementary File 14. The QTL enriched for the driver regions for urea vs production trait pairs (Table S20). Supplementary File 15. The chromosome number and chromosome coordinates of windows consistently tagged as antagonizers across urea vs production trait pairs (Table S21). Supplementary File 16. The genome-wide plots of the meta-analysis (two-trait and multi-trait) and the QTL enrichment between urea and production trait pairs (Figure S7-S10)

补充文件1：针对生产性状与繁殖性状的性状对，各基因组窗口（window）的窗口数量、染色体编号、染色体坐标、局部相关估计值、p值及各窗口状态（表S1~S3）；
补充文件2：生产-繁殖性状对中被一致标记为驱动因子的基因组窗口的染色体编号与染色体坐标（表S4）；
补充文件3：生产-繁殖性状对的驱动区域所富集的数量性状基因座（Quantitative Trait Locus，QTL）（表S5）；
补充文件4：生产-繁殖性状对中被一致标记为拮抗因子的基因组窗口的染色体编号与染色体坐标（表S6）；
补充文件5：生产与繁殖性状对的荟萃分析（双性状及多性状）全基因组绘图，以及二者间的QTL富集分析结果（图S1~S3）；
补充文件6：针对尿素相关性状与繁殖性状的性状对，各基因组窗口的窗口数量、染色体编号、染色体坐标、局部相关估计值、p值及各窗口状态（表S7~S8）；
补充文件7：尿素-繁殖性状对中被一致标记为驱动因子的基因组窗口的染色体编号与染色体坐标（表S9）；
补充文件8：尿素-繁殖性状对的驱动区域所富集的QTL（表S10）；
补充文件9：尿素-繁殖性状对中被一致标记为拮抗因子的基因组窗口的染色体编号与染色体坐标（表S11）；
补充文件10：尿素-繁殖性状对的拮抗因子区域所富集的QTL（表S12）；
补充文件11：尿素与繁殖性状对的荟萃分析（双性状及多性状）全基因组绘图，以及二者间的QTL富集分析结果（图S4~S6）；
补充文件12：针对尿素相关性状与生产性状的性状对，各基因组窗口的窗口数量、染色体编号、染色体坐标、局部相关估计值、p值及各窗口状态（表S13~S18）；
补充文件13：尿素-生产性状对中被一致标记为驱动因子的基因组窗口的染色体编号与染色体坐标（表S19）；
补充文件14：尿素-生产性状对的驱动区域所富集的QTL（表S20）；
补充文件15：尿素-生产性状对中被一致标记为拮抗因子的基因组窗口的染色体编号与染色体坐标（表S21）；
补充文件16：尿素与生产性状对的荟萃分析（双性状及多性状）全基因组绘图，以及二者间的QTL富集分析结果（图S7~S10）。