Organised genomic HIV and Pseudomonas sequence data

HivDB is a proof of concept display of a pipeline tool designed to collect and organize genomic data in order to optimize down stream analyses. Utilizing genbank files, genomes are parsed into their respective genes and saved with any appropriate meta data in FASTA formatted files. The resulting files allow the sequence data to be efficiently queried based on several parameters including country of isoloation, date, and accession number. This public RESTful webservice exposes the results of the pipeline on public HIV sequence data from NCBI. These are the source GenBank files used to build our site.

HivDB 是一款概念验证型流程工具的展示项目，其旨在采集并整理基因组数据以优化下游分析流程。该工具借助GenBank（基因库）文件，将基因组解析为各自对应的基因单元，并将其与相应元数据一同存储为FASTA格式文件（FASTA）。生成的这批文件支持基于多项参数高效检索序列数据，参数包括分离来源国、采集日期以及登录号（accession number）。本公开RESTful Web服务（RESTful webservice）可对外提供基于美国国家生物技术信息中心（NCBI）公开HIV序列数据的流程分析结果。本平台的构建即基于这批源GenBank文件。