Data from: Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss)

All landscape variable valuesMeasurements for all landscape variables both at natal site and along migration paths for every collection locality.all_env_Values.xlsxFull RAD Loci StatsLarge table including stats for each RAD locus globally and by population. The RAD sequence, mapping position to the O. mykiss assembly, and outlier classification are included for each locus. Additionally, the genotype success rate, observed heterozygosity, expected heterozygosity, minor allele frequency, and HWE corrected P.val (FDR) are included globally and for each population.full_loci_table.xlsxTop BLAST hitsTop BLAST hits for loci identified by the majority of outlier tests (3/4) and GEA analyses (2/3). For each SNP, the environmental association and category (if applicable) are included. Additionally, the top BLAST hit and nearest gene (within 10 kb) are included with their GO terms.Blast_table_V2.xlsxIndividual Read StatisticsRead statistics for each individual after process_radtags was performed.dry_ind_read_stats.xlsxPairwise FST TablePairwise population FST calculated by hierfstat. FST values are represented between each cluster (k=3), globally between populations, and between populations within each genetic cluster.FST_tables.xlsx

景观变量数据集：所有采样点的出生地及迁徙路径上的全部景观变量实测数据。all_env_Values.xlsx
RAD位点全量统计：包含全球尺度及各种群水平的每个RAD（限制性酶切位点相关DNA，Restriction-site Associated DNA）位点统计信息的大型表格。每个位点均涵盖其RAD序列、与O. mykiss（虹鳟，Oncorhynchus mykiss）参考基因组组装版本的比对位置、异常位点分类信息；同时包含全球及各种群水平的基因型成功率、观测杂合度、期望杂合度、次要等位基因频率，以及经HWE（哈迪-温伯格平衡，Hardy-Weinberg Equilibrium）校正的P值（FDR，错误发现率）。full_loci_table.xlsx
最优BLAST比对结果集：针对经多数异常性检验（3/4）及GEA（基因-环境关联分析，Gene-Environment Association Analysis）鉴定的位点所得到的最优BLAST比对结果。每个SNP（单核苷酸多态性，Single Nucleotide Polymorphism）均包含其环境关联信息及分类标签（如适用）；同时包含该位点的最优BLAST比对结果、10 kb范围内的最近邻编码基因及其GO（基因本体，Gene Ontology）注释信息。Blast_table_V2.xlsx
个体测序读段统计：经process_radtags工具处理后的每个个体的测序读段统计信息。dry_ind_read_stats.xlsx
群体两两FST统计表格：由hierfstat软件计算得到的群体间两两FST（固定分化指数，Fixation Index）值。该统计包含三类FST值：各聚类簇（k=3）间的FST值、全球尺度下所有种群间的FST值，以及每个遗传聚类簇内种群间的FST值。FST_tables.xlsx