遇见数据集

Mosta_3_stages_new

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Figshare2023-05-15 更新2026-04-08 收录
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anndata object based on data reported in [1] as provided in MOSTA. The anndata object include embryo sections E9.5 E2S1, E10.5 E2S1. The .X entry is based on reprocessing of the counts data consisting of normalize_total and log1p. anndata object based on data reported in [1] as provided in MOSTA. The anndata object include embryo sections E9.5 E2S1, E10.5 E2S1, E11.5 E1S2. 2000 most highly variable genes were selected. [1] Ao Chen, Sha Liao, Mengnan Cheng, Kailong Ma, Liang Wu, Yiwei Lai, Xiaojie Qiu et al. "Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays." Cell (2022)

本数据集为基于文献[1]报道的数据、由MOSTA提供的AnnData对象(anndata object)。该对象涵盖胚胎切片E9.5 E2S1、E10.5 E2S1及E11.5 E1S2,其.X矩阵基于计数数据的重处理结果,处理流程包含normalize_total与log1p变换。本数据集共筛选出2000个最高可变基因。文献[1]为Ao Chen、Sha Liao、Mengnan Cheng、Kailong Ma、Liang Wu、Yiwei Lai、Xiaojie Qiu等作者于2022年发表于《细胞》(Cell) 的论文《使用DNA纳米球图案化阵列构建小鼠器官发生的时空转录组图谱》(原英文标题:Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays)。

提供机构:
Klein, Dominik
创建时间:
2023-05-15
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