Additional file 2 of Transcriptional dynamics and chromatin accessibility in the regulation of shade-responsive genes in Arabidopsis

Additional file 2: Supplementary tables. Table S1. List of primers used in this study. Table S2a. PIF457 upregulated genes. Table S2b. PIF457 downregulated genes. Table S3. PIF7 direct targets and shade regulated genes. Table S4a. Differentially expressed genes in RNA-seq in response to LRFR. Table S4b. Gene enrichment analysis of the RNA-seq in response to LRFR. Table S4c. TPM of genes from the RNA-seq in response to LRFR. Table S4d. HTSEQ counts of RNA-seq in response to LRFR. Table S5a. Differential analysis of ATAC-seq in response to LRFR. Table S5b. Clustering of differentially accessible regions in ATAC-seq in response to LRFR. Table S5c. MACS3 peak counts for ATAC-seq in response to LRFR

附加文件2：补充表格。表S1 本研究使用的引物列表；表S2a PIF457上调基因；表S2b PIF457下调基因；表S3 PIF7直接靶基因及遮阴调控基因；表S4a 响应LRFR的RNA测序（RNA-seq）差异表达基因；表S4b 响应LRFR的RNA-seq基因富集分析；表S4c 响应LRFR的RNA-seq基因每百万转录本（Transcripts Per Million，TPM）数值；表S4d 响应LRFR的RNA-seq HTSEQ计数数据；表S5a 响应LRFR的转座酶可及性测序（ATAC-seq）差异分析；表S5b 响应LRFR的ATAC-seq差异可及区域聚类分析；表S5c 响应LRFR的ATAC-seq MACS3峰计数数据