Data For 'Priors And Posteriors In Bayesian Timing Of Divergence Analyses: The Age Of Butterflies Revisited'

Data and results for Chazot et al. (2018) 'Priors and Posteriors in Bayesian Timing of Divergence Analyses: the Age of Butterflies Revisited.' S1. List of taxa and Genbank accession codes. S2. Molecular matrix for the core analysis (S2a), the reduced dataset (S2b) and the dataset with a mitochondrial fragment (S2c). S3. RAxML topology (S3a) and time-calibrated tree (S3b) obtained from the core analysis. In S3a, numbers at the nodes indicate rapid-bootstrap support values. In S3b, node ages are the median of node age posterior distributions. S4. Tree obtained when using only deep-level fossil calibrations. Node ages are the median of node age posterior distributions. S5. Tree obtained when using only shallow-level fossil calibrations. Node ages are the median of node age posterior distributions. S6. Tree obtained from the reduced dataset. Node ages are the median of node age posterior distributions. S7. Tree obtained when using exponential fossil calibration priors. Node ages are the median of node age posterior distributions. S8. Tree obtained when adding a mitochondrial gene fragment. Node ages are the median of node age posterior distributions. S9. Tree obtained when using fossil information only modeled using lognormal priors. Node ages are the median of node age posterior distributions. S10. Tree obtained when using the host-plant ages obtained from Foster et al. (2017). In S10a node ages are the median of node age posterior distributions, while in S10b the node ages are the mode the mode of the kernel density estimate of the posterior distribution. S11. Tree obtained when using a Yule prior instead of Birth-Death tree prior. Node ages are the median of node age posterior distributions.Chazot等人（2018）《贝叶斯分化时间分析中的先验与后验：重新审视蝴蝶起源年代》一文配套的数据与结果。 S1. 类群列表与基因银行（GenBank）登录号。 S2. 核心分析所用分子矩阵（S2a）、简化数据集（S2b）以及包含线粒体片段的数据集（S2c）。 S3. 核心分析得到的RAxML系统发育拓扑树（S3a）与时间校准树（S3b）。其中S3a的节点旁标注数字为快速自举支持值；S3b的节点年龄为节点年龄后验分布的中位数。 S4. 仅采用深层化石校准得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。 S5. 仅采用浅层化石校准得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。 S6. 基于简化数据集得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。 S7. 使用指数型化石校准先验得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。 S8. 添加线粒体基因片段后得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。 S9. 仅使用对数正态先验建模的化石信息得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。 S10. 采用Foster等人（2017）的寄主植物年龄得到的系统发育树：其中S10a的节点年龄为节点年龄后验分布的中位数，S10b的节点年龄为后验分布核密度估计的众数。 S11. 使用Yule先验替代生灭树先验得到的系统发育树，其节点年龄为节点年龄后验分布的中位数。