Additional file 2 of Multi-omics reveals that the host-microbiome metabolism crosstalk of differential rumen bacterial enterotypes can regulate the milk protein synthesis of dairy cows

Additional file 2: Table S1. The differential rumen bacteria between type1 and type2. Table S2. The evaluation of network established by all samples. Table S3. The evaluation of network established by type1. Table S4. The evaluation of network established by type2. Table S5. The differential rumen metabolites between type1 and type2. Table S6. The enriched KEGG pathways of differential rumen metabolites between type1 and type2. Table S7. The differential serum metabolites between type1 and type2. Table S8. The enriched KEGG pathways of serum rumen metabolites between type1 and type2. Table S9. The differential milk metabolites between type1 and type2. Table S10. The enriched KEGG pathways of milk rumen metabolites between type1 and type2. Table S11. The bacteria of 5 modules of rumen microbiome based on WGCNA. Table S12. The bacteria of 10 modules of rumen metabolome based on WGCNA. Table S13. The bacteria of 5 modules of serum metabolome based on WGCNA. Table S14. The bacteria of 7 modules of milk metabolome based on WGCNA. Table S15. The expression level of all modules based on WGCNA of rumen microbiome and metabolome, serum metabolome, and milk metabolome. Table S16. The evaluation of network established by micro1. Table S17. The ASVs sequence of norank_f_Ruminococcaceae in this study.

附加文件2：表S1：1型与2型间差异瘤胃细菌。表S2：基于所有样本构建的网络的评估结果。表S3：基于1型样本构建的网络的评估结果。表S4：基于2型样本构建的网络的评估结果。表S5：1型与2型间差异瘤胃代谢物。表S6：1型与2型间差异瘤胃代谢物的富集京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes，简称KEGG）通路。表S7：1型与2型间差异血清代谢物。表S8：1型与2型间差异血清代谢物的富集KEGG通路。表S9：1型与2型间差异乳代谢物。表S10：1型与2型间差异乳代谢物的富集KEGG通路。表S11：基于加权基因共表达网络分析（Weighted Gene Co-expression Network Analysis，简称WGCNA）的瘤胃微生物组5个模块的细菌组成。表S12：基于WGCNA的瘤胃代谢组10个模块的细菌组成。表S13：基于WGCNA的血清代谢组5个模块的细菌组成。表S14：基于WGCNA的乳代谢组7个模块的细菌组成。表S15：瘤胃微生物组、瘤胃代谢组、血清代谢组及乳代谢组的WGCNA各模块的表达水平。表S16：基于micro1构建的网络的评估结果。表S17：本研究中未分类瘤胃球菌科（norank_f_Ruminococcaceae）的扩增子序列变异（Amplicon Sequence Variants，简称ASVs）序列信息。