遇见数据集

X-ray microtomography images of trabecular bone from the femoral head and condyle of 18 avian, 72 mammalian and one crocodilian species.

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Figshare2018-11-02 更新2026-04-08 收录
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This is the complete set of X-ray microtomography images used for inter-species trabecular scaling analysis in Doube et al. (2011).<br>Images were produced by scanning whole femoral heads and condyles, or 1 cm cubes cut from femoral heads and condyles, on an X-tek HMX 225 (Tring, UK), with a maximum pixel spacing of 15 µm. MD and JRH collected the specimens; MD cut the cubes; MMK did the imaging with assistance from Richie Abel of NHM London. Full details are included in the paper.<br><br>Images are spatially-calibrated 16-bit tiff stacks that will open readily in ImageJ. They have been compressed with bzip2, so will require decompression prior to loading in image processing software.<br>If you use these data, please cite both this dataset (as required by the CC BY licence) and Doube et al. (2011):<br> Doube M, Kłosowski MM, Wiktorowicz-Conroy AM, Hutchinson JR, Shefelbine SJ. 2011 Trabecular bone scales allometrically in mammals and birds. <i>Proc. R. Soc. B</i> <b>278</b>, 3067–3073. (doi:10.1098/rspb.2011.0069) <br>Between the original study and archiving this set, a small number of images were lost. We have recreated the inner cubes by cropping from the original DICOM data following the study protocol, for:<br>IC deer1 <i>Cervus elaphus</i> red deer, head, condyleUMZC 429p <i>Geococcyx californianus</i> roadrunner head, condyleUMZC h15052 <i>Tragulus ravus</i> lesser mouse deer, head, condyleRVC kent_cheetah <i>Acinonyx jubatus</i> cheetah, head, condyleRVC Przewalski's horse, <i>Equus caballus przewalskii</i> head, condyle<br>File naming follows a convention of:Institution_accessionID_Genus_species_headORcondyle.tif.bz2<br>

本数据集为Doube等人(2011年)开展物种间骨小梁尺度缩放分析所用的全部X射线显微断层成像(X-ray microtomography)图像集。 图像通过X-tek HMX 225型设备(英国特灵)扫描完整股骨头、髁突,或从股骨头及髁突上切取的1 cm立方块获取,最大像素间距为15 µm。 标本由MD与JRH采集,MD负责切取立方块,MMK在伦敦自然历史博物馆(NHM London)的Richie Abel协助下完成成像。实验完整细节已发表于原文。 图像为经空间校准的16位TIFF图像栈,可直接在ImageJ软件中打开。图像已通过bzip2压缩,因此在图像处理软件中加载前需先解压。 若使用本数据集,请遵循CC BY许可的要求,同时引用本数据集与Doube等人(2011年)的研究: Doube M、Kłosowski MM、Wiktorowicz-Conroy AM、Hutchinson JR、Shefelbine SJ. 2011 哺乳动物与鸟类的骨小梁均呈现异速生长尺度效应. 《英国皇家学会学报B辑》278卷,3067–3073页. (doi:10.1098/rspb.2011.0069) 在原始研究开展至本数据集归档期间,有少量图像丢失。我们按照原研究方案,从原始DICOM数据中裁剪重建了以下样本的内部立方块图像: IC deer1:*Cervus elaphus* 马鹿,头部、髁突 UMZC 429p:*Geococcyx californianus* 走鹃,头部、髁突 UMZC h15052:*Tragulus ravus* 小鼷鹿,头部、髁突 RVC kent_cheetah:*Acinonyx jubatus* 猎豹,头部、髁突 RVC Przewalski's horse:*Equus caballus przewalskii* 普氏野马,头部、髁突 文件命名遵循以下规则:机构_存档编号_属名_种名_头部OR髁突.tif.bz2

提供机构:
Michał M Kłosowski
创建时间:
2018-10-30
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