Replication Data for: 2017-12-06: DIP/WT Images (8hrs x5 magnification) - Analysis Results (new settings)
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Replication Data for: 2017-12-06: DIP/WT Images (8hrs x5 magnification) - Analysis Results (new settings): settings and new parameters: 4PX and 15PX We tried to resolve an issue with the "large circles" in images. It required adding a new parameter - "Relative intensity variation in a spot". I think that its adequate value is 0.25 or 0.5. Also please note that currently there are two parameters that control minimal spot size - "Minimal linear size of an object" and "Min number of pixels in one object". Probably the second parameter can be excluded from the interface as a control solely via linear size (radius) seems to be sufficient. Anyway, for the 5x images acceptable min linear size can be set to 10 (or may be even to a lower value to separate small closely located spots), and min number of pixels can be set to 50-100 (or again even smaller - e.g., even min radius 4 with min number of pixels 15 seem to be ok for a subset of images we used for testing). (Generally if one does not want to think about a value of min number of pixels, he can set it, e.g., to a square of min_radius or a half of this square).
复现数据:2017年12月6日:DIP/WT图像(8小时×5倍放大)—— 新设置下的分析结果:设置与新增参数:4PX与15PX。本次工作旨在解决图像中"大圆圈"相关问题,为此新增了一项参数——"斑点相对强度变化量(Relative intensity variation in a spot)"。笔者认为其合理取值为0.25或0.5。另需说明:当前共有两项参数用于控制最小斑点尺寸,分别为"目标最小线性尺寸(Minimal linear size of an object)"与"单目标最小像素数(Min number of pixels in one object)"。鉴于仅通过线性尺寸(半径)即可实现有效控制,第二项参数或可从操作界面中移除。无论如何,针对5倍放大图像,可接受的最小线性尺寸可设为10(甚至可调低以分离间距较近的小型斑点),而单目标最小像素数可设为50至100(同样可进一步调低——例如在我们的测试子集图像中,最小半径设为4、最小像素数设为15即可取得良好效果)。(一般而言,若无需手动调整最小像素数参数,可将其设为最小半径的平方,或该平方值的一半即可。)
创建时间:
2018-01-03



