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Quail Thrush (Cinclosoma) whole genome raw sequence reads (Illumina)

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Research Data Australia2024-12-14 收录
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https://researchdata.edu.au/quail-thrush-cinclosoma-reads-illumina/1333670
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资源简介:
125 bp paired-end Illumina HiSeq 2500 v4.0 NGS sequence reads for 72 individually indexed Cinclosoma specimens (by mitochondrial data composed of C. castanotum [4], C. clarum [43], C. fordianum [23], and one each of C. punctatum and C. cinnamomeum alisteri as outgroups). This sequence data forms the basis of a biogeographic population genomics study of Cinclosoma across Australia's semi-arid south and west. \nLineage: DNA was extracted from toe pads of voucher specimens housed at the Australian National Wildlife Collection, the Western Australian Museum, and the South Australian Museum. Library preparation was performed in-house using a modified version of the Meyer-Kircher protocol. Full details of DNA extraction and library preparation methods may be found here:

本数据集涵盖72份经单独索引标记的斑胸鹩鹛属(Cinclosoma)标本的125碱基对(bp)双端Illumina HiSeq 2500 v4.0下一代测序(Next-Generation Sequencing, NGS)读段,其线粒体数据包含栗背斑胸鹩鹛(C. castanotum)[4]、克拉姆斑胸鹩鹛(C. clarum)[43]、福特斑胸鹩鹛(C. fordianum)[23],以及作为外类群(outgroup)的1份点斑斑胸鹩鹛(C. punctatum)与1份肉桂斑胸鹩鹛阿利斯亚种(C. cinnamomeum alisteri)。 该测序数据为澳大利亚半干旱南部与西部地区的斑胸鹩鹛属生物地理学群体基因组学研究奠定了核心基础。 样本溯源:DNA提取自保存于澳大利亚国家野生动物标本馆、西澳大利亚博物馆及南澳大利亚博物馆的凭证标本(voucher specimens)的趾垫组织。 文库构建采用经自主优化改良的Meyer-Kircher文库制备方案完成。 DNA提取与文库构建的完整方法细节可参见以下链接:
提供机构:
Commonwealth Scientific and Industrial Research Organisation
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