Reference files for analysis of TE transcription in African Turquoise Killifish
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资源简介：
README - Transposable Element Differential Expression Analysis Protocol from RNA-seq Data###########################<br>Supplied reference files<br>- Reference genome sequence, predicted RNA sequences and genome annotations (GCA_014300015.1; 2020 genome) These files are publicly available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599375/ GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna GCA_014300015.1_MPIA_NFZ_2.0_genomic.gtf GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic.fna<br>- FishTEDB sequences for N. furzeri transposons This file can be obtained at: http://www.fishtedb.org/project/species-detail?species=Nothobranchius+furzeri Nothobranchius_furzeri_FishTEDB_TEs.fa<br>- Modified reference files including TE sequences/annotations for * kallisto/transcriptome based method: GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic_WithFishTEDBv4.fasta<br> * STAR/genome based method: GCA_014300015.1_MPIA_NFZ_2.0_genomic_WithFishTEDBv4.fasta GCA_014300015.1_MPIA_NFZ_2.0_genomic_WithFishTEDBv4.gtf<br><br>Related to repository: https://github.com/BenayounLaboratory/Killifish_Transposon_Quantification<br>
提供机构：
Benayoun, Bérénice A.; Teefy, Bryan; Malone, Matthew
创建时间：
2021-10-05
