Wilson et al. CANINE DISTEMPER VIRUS PHYLOGENETIC STRUCTURE AND ECOLOGICAL CORRELATES OF INFECTION IN MESOCARNIVORES ACROSS ANTHROPOGENIC LAND USE GRADIENTS

Herein, we provide data (Complete_data_CDV_vars.csv) and code from a study of mesocarnivores (Wilson et al. Wilson et al. CANINE DISTEMPER VIRUS PHYLOGENETIC STRUCTURE AND ECOLOGICALC9 ORRELATES OF INFECTION IN MESOCARNIVORES ACROSS ANTHROPOGENIC LAND USE GRADIENTSintending to understand what intrinsic and extrinsic (e.g. land use, temperature, precipitation, elevation) were associated with CDV prevalence. We use a generalized linear model to explore relationships between death due to CDV infection and affected species, the spatial distribution of positive and negative cases across land use types, and environmental and host factors associated with infection with a generalized linear model. We also genetically characterized 32 strains from positive animals by amplification and partial sequencing of the CDV H-gene and compared this to reference sequences.本研究提供来自一项中型食肉动物相关研究的数据集（Complete_data_CDV_vars.csv）与配套代码，该研究见于Wilson等人的《犬瘟热病毒（Canine Distemper Virus, CDV）系统发育结构及人类活动土地利用梯度下中型食肉动物感染的生态关联因素》，旨在明确哪些内在与外在因素（如土地利用类型、气温、降水量、海拔高度）与犬瘟热病毒感染率相关。我们采用广义线性模型（generalized linear model, GLM），探究犬瘟热病毒感染致死与易感物种之间的关联、阳性与阴性病例在不同土地利用类型中的空间分布特征，以及与感染相关的环境与宿主因素。此外，我们通过对犬瘟热病毒血凝素（H）基因进行扩增与部分测序，对32株取自阳性感染动物的毒株完成基因分型，并将其与参考序列进行比对分析。