Comparison of SNP numbers and frequency estimate accuracy revealed by Pool-seq and by GBS.

Columns report: library/lane identity (population A or B, estimation of sequencing depth per individual in Pool-seq, and software used to detect SNPs of Pool-seq data set), number of SNPs detected by GBS (SNPGBS) and Pool-seq (SNPPool-seq), overlapping number of SNPs detected (SNPboth), concordance correlation coefficient (CCC) with lower and upper 95% confidence limit (LCL; UCL) of CCC, the mean of the absolute difference in SNP frequency estimates of the two methods (|Δf|), false negative rate (FN rate), that is, the fraction of SNPs called by GBS but not by Pool-seq, and their mean minor allele frequency (FN MAF).列项报告：文库/泳道标识（包含种群A或B、Pool-seq（混池测序）中各个体的测序深度估算值，以及用于检测Pool-seq数据集单核苷酸多态性（SNPs）的软件）、GBS（基因组简化测序，Genotyping-by-Sequencing）检测得到的单核苷酸多态性数量（SNPGBS）与Pool-seq检测得到的单核苷酸多态性数量（SNPPool-seq）、两种方法共同检测到的单核苷酸多态性数量（SNPboth）、一致性相关系数（CCC）及其95%置信下限（LCL）与95%置信上限（UCL）、两种方法的SNP频率估算值绝对差值的平均值（|Δf|）、假阴性率（FN率，即GBS检测到但Pool-seq未检测到的SNP占比）以及该类假阴性位点的平均次要等位基因频率（FN MAF）