Summary of six component maps used to construct the cotton HDC map.

1)all female and recurrent parents belong to G. hirsutum, and all male parents belong to G. barbadense.2)T3, GV, TH and E3 maps were constructed using JoinMap program. PK and CH maps were constructed using MapMaker program.3)including target region amplification polymorphism (TRAP), sequence-related amplified polymorphism (SRAP), isozyme, gene-derived, and morphological markers.4)the loci not present in any one of the other five maps.5)TRAP, SRAP, morphological and some AFLP markers could not be easily traced back to their description, and were not included in consensus map integration.6)a consensus map constructed with JoinMap (combine data for map integration) using 75 BC1 and 140 RIL populations.1) 所有雌性亲本与轮回亲本均属于陆地棉（G. hirsutum），所有雄性亲本均属于海岛棉（G. barbadense）。 2) T3、GV、TH及E3遗传图谱均通过JoinMap软件构建；PK与CH遗传图谱则通过MapMaker软件构建。 3) 涵盖靶标区域扩增片段长度多态性（target region amplification polymorphism, TRAP）、序列相关扩增多态性（sequence-related amplified polymorphism, SRAP）、同工酶、基因衍生标记及形态学标记。 4) 其余5张图谱中均未出现的基因座。 5) TRAP、SRAP、形态学标记及部分扩增片段长度多态性（Amplified Fragment Length Polymorphism, AFLP）标记难以追溯其原始描述信息，故未被纳入整合遗传图谱的构建流程。 6) 以75个回交一代（BC1）群体与140个重组自交系（RIL）群体的分型数据为基础，借助JoinMap软件（用于整合图谱构建的数据合并环节）构建得到整合遗传图谱。