Additional file 2: of Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato

Table S1. PCR primers designed to detect heterozygous deletions on chromosome 1 in US-W4. Table S2. PCR-based genotypes across chromosome 1. Table S3. PCR primers for sanger sequencing of crossovers. Table S4. Multinomial goodness of fit for crossover counts at each chromosome based on fit to Poisson distribution. Table S5. Monte Carlo simulation for the association of crossover breakpoints at various genomic regions. Table S6. Gene ontology enrichment for crossovers against all potato genes. Table S7. Spearmanâ s correlation coefficient (rho) for 100 kb windows across all 12 potato chromosomes. Table S8. Enrichment of DNase-seq and H3K4me3 reads in crossover-associated genic features relative to nearby simulated regions. Table S9. Fisherâ s Exact Test between the count of fine-scale crossovers (n=756) and matched cold regions (n=756) containing different repeat classes. Table S10. Generalized linear model of crossover counts per 100 kb using genomic and chromatin features. Table S11. Generalized linear model of crossover counts per 10 kb using genomic and chromatin feature. (PDF 6763 kb)