遇见数据集

Supplementary data for: Evolution of skeletal mineralogy in cheilostome bryozoans across shift from calcite to aragonite seas

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Zenodo2025-02-20 更新2026-05-26 收录
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Contains all files and code necessary to replicate study. Files are as follows: "AGE-ONLY.xlsx": Contains names of taxa found in all localities in the AGE-ONLY half of the fossil occurrence dataset from Lidgard et al. 2021. "BryoMinBase.csv": The database of measurements of skeletal aragonite content in bryozoans from Piwoni-Piorewicz et al. 2024. "coords.csv": Locality information for every bryozoan-yielding locality in Lidgard et al. 2021. "cyclostome_genera.xlsx": Contains of names of cyclostome bryozoans in the Lidgard dataset; to be removed for analysis of cheilostomes only. "cyclostome_synonyms.xlsx": Related to #4, contains synonyms of cyclostome bryozoans. "FOSLOCAL.xlsx": Contains names of taxa found in all localities in the FOSLOCAL half of the fossil occurrence dataset from Lidgard et al. 2021. "genera.csv": Lists all genera in the Lidgard dataset along with some geological information. "mineralogy_fossil.R": Contains all R code needed to replicate the fossil occurrence portion of our methods. "mineralogy_phylo.R": Contains all R code needed to replicate the phylogenetic comparative portion of our methods. "mineralogy_phylo_randomizing_tips.R": Related to #9, contains code to explore the consequences of randomly matching tips in the phylogeny with taxa in BryoMinBase. "timetree.tre": Time-scaled phylogeny used in phylogenetic comparative analyses. "XRDfossil.xlsx": A new compilation of direct measurements of aragonite content in fossil cheilostome skeletons.

本数据集包含复现本研究所需的全部文件与代码,具体文件如下: "AGE-ONLY.xlsx": 收录Lidgard等2021年发表的化石产出数据集的AGE-ONLY子集中所有采样点的分类单元名称。 "BryoMinBase.csv": 源自Piwoni-Piorewicz等2024年的研究,为苔藓动物(bryozoans)骨骼文石(aragonite)含量测量数据库。 "coords.csv": 记录Lidgard等2021年研究中所有产出苔藓动物的采样点位置信息。 "cyclostome_genera.xlsx": 收录Lidgard数据集内环口苔藓动物(cyclostome bryozoans)的属名,仅针对唇口苔藓动物(cheilostomes)开展分析时需移除该类群数据。 "cyclostome_synonyms.xlsx": 与第4项内容相关,收录环口苔藓动物的同物异名信息。 "FOSLOCAL.xlsx": 收录Lidgard等2021年发表的化石产出数据集的FOSLOCAL子集中所有采样点的分类单元名称。 "genera.csv": 列出Lidgard数据集中的所有属,并附带部分地质相关信息。 "mineralogy_fossil.R": 包含复现本研究中化石产出部分分析方法所需的全部R代码。 "mineralogy_phylo.R": 包含复现本研究中系统发育比较分析(phylogenetic comparative analyses)所需的全部R代码。 "mineralogy_phylo_randomizing_tips.R": 与第9项内容相关,包含用于探究系统发育树末端随机匹配BryoMinBase中类群所产生影响的代码。 "timetree.tre": 系统发育比较分析中使用的时间校准系统发育树(time-scaled phylogeny)。 "XRDfossil.xlsx": 全新汇编的化石唇口苔藓动物骨骼文石含量直接测量数据集。

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2025-02-20
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