Additional file 2 of A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference

Additional file 2: Dataset S1. Matrix of the DE genes among pairwise comparissons between frond's hydration states of H. caudiculatum. Columns indicates de sequnce ID (id), fold change (log FC), counts per million (log CPM), the significance (PValue), the false discovery rate value (FDR), and the normalized counts for each hydration state (HcaFH.matrix, HcaD.matrix, and HcaRH.matrix), Dataset S2. Matrix of the DE genes among pairwise comparissons between frond's hydration states of H. dentatum. Columns indicates de sequnce ID (id), fold change (log FC), counts per million (log CPM), the significance (PValue), the false discovery rate value (FDR), and the normalized counts for each hydration state (HdFH, HdD, and HdRH), Dataset S3. Matrix showing those highly abundant genes without significant changes between frond's hydration states of H. caudiculatum and H. dentatum. Columns shows the gene id, transcript id, the counts abundance for each hydration state, the UniProt ID, the percentage of similitud of the Blast query, and the Protein Name, Dataset S4. Matrix of the Self-Organizing Maps output for the Nodes 2, 3 and 6 for H. caudiculatum, Dataset S5. Matrix of the Self-Organizing Maps output for the Nodes 1, 2 and 4 to 6 for H. dentatum.附加文件2：数据集S1：H. caudiculatum叶状体水分状态两两比较间的差异表达基因（Differentially Expressed Genes, DEGs）矩阵。各列依次为序列ID、折叠变化（log FC）、每百万读数（log CPM）、显著性P值（PValue）、错误发现率（FDR），以及各水分状态下的标准化计数（对应HcaFH.matrix、HcaD.matrix与HcaRH.matrix）。 数据集S2：H. dentatum叶状体水分状态两两比较间的差异表达基因矩阵。各列依次为序列ID、折叠变化（log FC）、每百万读数（log CPM）、显著性P值（PValue）、错误发现率（FDR），以及各水分状态下的标准化计数（对应HdFH、HdD与HdRH）。 数据集S3：展示H. caudiculatum与H. dentatum两种植物叶状体水分状态间无显著差异的高丰度基因矩阵。各列依次为基因ID、转录本ID、各水分状态下的计数丰度、UniProt ID、BLAST查询相似度百分比，以及蛋白质名称。 数据集S4：H. caudiculatum节点2、3、6的自组织映射（Self-Organizing Maps, SOM）输出矩阵。 数据集S5：H. dentatum节点1、2、4至6的自组织映射输出矩阵。