Additional file 1: of Repertoire-wide gene structure analyses: a case study comparing automatically predicted and manually annotated gene models

Table ST1. Data sources and used files: list of publications, download sources, and used files of all seven species; Table ST2. Auto vs. manual: counts of gene models that were subjected to manual annotation including non-coding models, as well as of OGS, MAN-ADD, MAN-SUB, AUTO, and AUTO-SUB; Table ST3. Tests: results of Bonferroni-corrected two-sample Kolmogorov-Smirnov tests and two-sample Wilcoxon tests of all combinations of the five (sub)sets given for each species and each gene structural property; Table ST4. Correlation coefficients: lists for each species and each set (AUTO, OGS, AUTO-SUB, MAN-SUB, MAN-ADD, and resampled samples 1–1000) the Spearman’s rank correlation coefficient of each of the four comparisons; Table ST5. Cuticle proteins — all v1.1: list of cuticle protein genes manually added or manually annotated in Oncopeltus fasciatus; Table ST6. Chemoreceptors — all v1.1: list of chemoreceptor genes manually added or manually annotated in Oncopeltus fasciatus; Table ST7. CP and CR KS-tests: results of (Bonferroni-corrected) two-sample Kolmogorov-Smirnov tests comparing cuticle protein (CP) and chemoreceptor (CR) gene model structure properties to OGS, MAN-ADD and each other. (XLSX 933 kb)表ST1. 数据来源与使用文件：汇总全部7个物种的出版物列表、下载来源及所使用文件的表格； 表ST2. 自动注释与人工注释：统计接受人工注释（含非编码模型）的基因模型数量，以及OGS、MAN-ADD、MAN-SUB、AUTO、AUTO-SUB各组的样本量； 表ST3. 统计检验：针对每个物种的5个（子）数据集组合及每个基因结构属性，经Bonferroni校正的双样本Kolmogorov-Smirnov检验（Kolmogorov-Smirnov test）与双样本Wilcoxon秩和检验的结果表格； 表ST4. 相关系数：针对每个物种及各数据集（AUTO、OGS、AUTO-SUB、MAN-SUB、MAN-ADD以及重采样样本1–1000），列出4种比较的斯皮尔曼（Spearman）等级相关系数的汇总表格； 表ST5. 表皮蛋白（cuticle protein, CP）——全部v1.1版本：Oncopeltus fasciatus中人工添加或经人工注释的表皮蛋白基因列表； 表ST6. 化学感受器（chemoreceptor, CR）——全部v1.1版本：Oncopeltus fasciatus中人工添加或经人工注释的化学感受器基因列表； 表ST7. CP与CR的KS检验：经Bonferroni校正的双样本Kolmogorov-Smirnov检验结果，对比表皮蛋白（CP）、化学感受器（CR）的基因模型结构属性与OGS、MAN-ADD及其他各组的差异。（XLSX 933 kb）