Additional file 4 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

Additional file 4. Tables for Mash-based clustering and silhouette scores. Table S6. Mash distances. Table with Mash based distances across all 2371 selected genomes. Table S7. Silhouette scores (primary). Table with list of 2371 genomes with assigned clusters based on clustering analysis. The columns represent the assigned clusters after each filtering round (upto 5). The genomes being removed based on silhouette score cutoff of 0.4 are annotated as “Dropped”. The columns also mention the silhouette score at each round of filtering. The final round includes 1999 genomes with primary Mash-cluster assignments. Table S8. Silhouette scores (secondary). Table with list of 1999 genomes with assigned clusters at secondary level based on clustering analysis. The columns represent the assigned clusters after each filtering round (upto 3). The genomes being removed based on silhouette score cutoff of 0.4 are annotated as “Dropped”. The columns also mention the silhouette score at each round of filtering. The final round includes 1670 genomes with secondary Mash-cluster assignments.附加文件4：基于Mash的聚类与轮廓系数（Silhouette Score）相关表格。表S6：Mash距离表。收录全部2371个筛选基因组的基于Mash算法计算的基因组距离矩阵。表S7：主轮廓系数表。包含2371个经聚类分析分配聚类簇的基因组列表，表格各列依次展示每一轮过滤（最多5轮）后得到的分配聚类簇；基于0.4的轮廓系数截断阈值被剔除的基因组将被标注为"Dropped"。各列同时标注了每一轮过滤后的轮廓系数值，最终轮次共保留1999个基因组，并完成主Mash聚类分配。表S8：次轮廓系数表。包含1999个经二级聚类分析分配聚类簇的基因组列表，表格各列依次展示每一轮过滤（最多3轮）后得到的分配聚类簇；基于0.4的轮廓系数截断阈值被剔除的基因组将被标注为"Dropped"。各列同时标注了每一轮过滤后的轮廓系数值，最终轮次共保留1670个基因组，并完成二级Mash聚类分配。