Population genetics of pBI143 in mothers and their infants

This datapack contains the primary output files for four mother-infant datasets from Finalnd, Italy, Sweeden, and the United Stats generated by anvi'o. <br> The generation of these project files is very straightforward with the program anvi-run-workflow, to which we essentially provided the plasmid sequence and a list of metagenomes of interest. The program anvi-run-workflow simply (1) recruited reads using the plasmid sequence from each metagenome it was given, (2) profiled each read recruitment result using the program anvi-profile, and finally (3) merged all single profile databases using the program anvi-merge. <br> See the analysis details at https://merenlab.org/data/pBI143

本数据集包包含由anvi'o生成的、来自芬兰、意大利、瑞典以及美国的四组母婴数据集的核心输出文件。<br>这些项目文件可通过anvi-run-workflow程序便捷生成：我们仅需向该程序提供质粒序列以及目标宏基因组列表即可。<br>anvi-run-workflow程序的执行流程十分简洁：(1) 基于提供的质粒序列，从对应宏基因组中招募读段；(2) 通过anvi-profile程序对每一轮读段招募结果进行谱分析；(3) 最终通过anvi-merge程序合并所有单样本谱分析数据库。<br>可访问https://merenlab.org/data/pBI143 查看详细分析内容。