Genomic data of Nanmaohu Park vascular plant specimen, RL0610
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http://gigadb.org/dataset/101673
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002184. Preliminary identification is that it is of the family Aristolochia chlamydophylla. <br>The K-mer distribution of the sequencing predicted the genome size to be Not recordedbp. We have generated 62300000000bp of data, which gives a theoretical coverage of x.
本数据集采集自中国云南瑞丽植物园的维管植物(vascular plants)样本。所有样本的采集地理范围为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔区间为740米至1200米(海拔基准面为海平面)。本次共采集维管植物样本1093份,每份样本均取幼叶用于测序,同时制作了凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。
其中761份样本成功提取到可用于测序的DNA;剩余332份仅制作了凭证标本,相关植物图像已收录于本数据集。这761份样本涵盖49目、137科的689种维管植物。
目前团队仍在推进所有标本的正式鉴定工作,但截至论文发表时,仅极少数样本完成了科以上分类阶元之外的鉴定。
本数据集包含凭证标本编号为HCNGB:RUILI:HCNGB_00002184的植物的基因组数据与图像。经初步鉴定,该样本隶属于包含苞叶马兜铃(Aristolochia chlamydophylla)的类群。
经测序的K-mer分布分析预测,该样本的基因组大小未被记录。本次共生成62300000000bp的测序数据,理论覆盖度为x。
提供机构:
GigaScience Database
创建时间:
2019-01-24



