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Supplemental material for Hogle et al. 2015 mBio

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Figshare2016-01-20 更新2026-04-08 收录
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<strong>Publication reference:</strong> "Trace metal acquisition by heterotrophic bacterioplankton with contrasting trophic strategies" <strong>Available at mBio website, Figshare.com, and slhogle.github.io :</strong><br>Dataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundance<br>Dataset2.xlsx - CDD/PFAM/COGs used to identify metal transporters<br>Dataset3.xlsx - Predicted FUR boxes<br>Dataset4.xlsx - COGs for Tree Construction TableS1.pdf - Metal transporter families and descriptions TableS2.pdf - TBDT Clusters and enrichment FigureS1.pdf - TRAP transporters in siderophore uptake genome neighborhoods<br>FigureS2.pdf - Network visualization of pairwise Spearman's rank correlation coefficients supplemental_text.pdf - Supplementary results and methods <strong>Available only at Figshare.com and slhogle.github.io</strong><br>DatasetS5.xlsx - TBDT neighborhoods, and Markov Clustering parameters<br>DatasetS6.xlsx - SAR11 IMG genome cart export<br>DatasetS7.xlsx - Roseobacter IMG genome cart export<br>DatasetS8.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments<br>DatasetS9.xlsx - Pairwise false discovery rate corrected Spearman's rank correlation coefficients scripts - folder with scripts and markdown used to do analysis
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2015-10-17
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