Diurnal variation for rice leaves in Tsukuba field in 2014. Oryza sativa

We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan. In this series of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Tsukuba. Time-course transcriptional profiling of rice leaf in Tsukuba field in 2014. This experiment was performed to analyze the dynamics of field transcriptome data. Overall design: 24h time series with 2h interval were sampled for 2 developmental stage with no replicate. The submitted samples were field transcirptome data in a paddy field at Tsukuba in Japan. Leaf samples were harvested in a 6 hr(or 8hr)-interval for 13 times. This set corresponds to three-day time-series data. Transplanting dates varied as reported in each sample record.

我们此前已利用日本筑波某稻田种植样本的田间转录组（field transcriptome）数据，针对多种环境因子下的基因表达完成了统计建模研究。本系列实验旨在优化模型以适配实际应用场景。为此，我们在日本7处不同区位的稻田（分别为札幌、古川、富山、筑波、高槻、古川及福冈）开展了田间转录组检测实验。本数据集源自其中一处采样点——筑波，具体为2014年筑波稻田中水稻叶片的时间序列转录谱分析数据，本实验旨在解析田间转录组数据的动态变化特征。实验设计概述：针对2个发育阶段，以2小时间隔采集24小时时间序列样本且未设置生物学重复。本次提交的样本数据源自日本筑波某稻田的田间转录组数据。水稻叶片样本以6小时（或8小时）为间隔完成13次采样，该数据集对应为期3天的时间序列采样数据。各样本记录中所记载的插秧日期存在差异。