Summary of ChIP-seq results showing localization of PhoP binding sites in the M. tuberculosis genome.

The table lists regions enriched in immunoprecipitated PhoP-DNA complexes from the H37Rv wild type strain as compared to the phoP mutant. Fold change expression values as determined by RNA-seq experiments are also reported for the flanking genes. Predicted or validated operons found to be deregulated in the phoP mutant are indicated.ap value bFDR 0.00%.cThis column lists the predicted operons (according to [17], [18], [19]), located downstream of PhoP binding sites, that were found to be deregulated in the phoP mutant compared to the wild type strain.§Region detected is between two genes transcribed in opposite direction.£Region located in 3′-end of the gene.ND: fold change expression levels of phoP were not quantified since the gene carries a deletion in the mutant strain.