遇见数据集

H3K27ac Signal Track for HT-1197, HepG2, and MSFIB

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Figshare2020-06-11 更新2026-04-08 收录
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Genome-wide signal tracks for each sample were generated in two stages: (i) assess ChIP–seq quality and obtain the predominant fragment length using phantompeakqualtools (https://code.google.com/archive/p/phantompeakqualtools/); (ii) use align2rawsignal (https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki) to generate signal track (parameters: -n = 5, -k = epanechnikov, -l = [frag-ment length from step (i)], -w = 150, -f = 0).

所有样本的全基因组信号轨道(genome-wide signal tracks)均通过两个阶段生成:(i) 采用phantompeakqualtools评估染色质免疫共沉淀测序(ChIP-seq)质量,并获取主导片段长度,相关工具链接为https://code.google.com/archive/p/phantompeakqualtools/;(ii) 使用align2rawsignal生成信号轨道,所用参数为:-n=5、-k=埃潘尼科夫核(epanechnikov)、-l=第一阶段获取的片段长度、-w=150、-f=0,相关工具链接为https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki。

提供机构:
Rohith Srivas
创建时间:
2020-06-11
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