Additional file 4: Table S3. of A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes

Summary of known microRNAs. Number of sequence reads was determined with either counts from known microRNA sequence search (Seq search) or miRDeep output, using the highest number of reads for that sequence. Listed genomic locations for mature microRNA sequences are relative to RefSeq annotated transcripts in UCSC genome browser (hg38). For mature microRNA sequences spanning both introns and coding region, or UTR or coding of alternative transcripts, sequence is listed in coding region. Conservation to human (H), chimp (C), rhesus monkey (R), dog (D), mouse (M), and zebrafish (Z) are listed. Conservation of mature microRNA sequence indicates exact sequence alignment in listed species, allowing for up to one base mismatch outside of the microRNA seed sequence (nucleotides 2â 8), and no mismatches within the seed sequence. (XLSX 45 kb)

已知微小RNA（microRNAs）汇总信息。序列读段计数可通过两种方式获取：基于已知微小RNA序列搜索（Seq search）得到的计数，或miRDeep输出结果，最终取对应序列的最高读段数。成熟微小RNA序列的基因组定位均以UCSC基因组浏览器（hg38）中注释的RefSeq转录本为参照。若成熟微小RNA序列同时跨越内含子与编码区，或跨越可变转录本的非翻译区（UTR）与编码区，则该序列归类至编码区项下。本次汇总列出了该数据集与人类（H）、黑猩猩（C）、恒河猴（R）、犬（D）、小鼠（M）及斑马鱼（Z）的保守性信息。成熟微小RNA序列的保守性判定标准为：在所列物种中实现精确序列比对，允许在微小RNA种子序列（第2至第8位核苷酸）区域外存在至多1个碱基错配，且种子序列区域内无碱基错配。（XLSX格式，文件大小45 kb）