Additional file 14 of Genomic insights into positive selection during barley domestication

Additionalfile 14: Table S1. Statistics of orthologs, syntenic gene pairs, and syntenic blocks. Table S2. The Ka, Ks, and Ka/Ks values for 9,176 and 6,483 single-copy orthologous genes between wild barley and landrace, and between landrace, and improved cultivar, respectively. Table S3. Correlation analysis of substitution rate, gene feature, and codon usage bias.(The Ka, Ks, and Ka/Ks values were calculated between wild barley and landrace). Table S4. Correlation analysis of substitution rate, gene feature, codon usage bias and expression pattern. (The Ka, Ks, and Ka/Ks values were calculated between landrace and improved barley). Table S5. Distributions of Ka/Ks values between wild barley and landrace, and between landrace and improved cultivar. Table S6. Comparisons of evolutionary rate, gene property, codon usage bias between PSGs and NSGs in barley. Table S7. Comparisons of expression patterns between PSGs and NSGs in barley. Table S8. Statistics of codon usage bias indicators. Table S9. Distributions of transcription factor gene family for different orthologous groups. Table S10. Statistics of the 49 representative transcription factor gene families. Table S11. The detail information of positively selected transcription factors. Table S12. GO enrichment analysis of PSGs. Table S13. KEGG pathway enrichment analysis of PSGs. Table S14. Distributions of PSG-related and NSG-related SNPs. Table S15. Tracy-Widom test for the first five eigenvectors in the PCA. Table S16. Nucleotide diversity (π) analysis between PSGs and NSGs. Table S17.Comparisons of FST values between PSGs and NSGs within different genomic regions. Table S18. SNPs distributions, nucleotide diversities, haplotypes, and expression patterns of candidate genes. Table S19. Accession numbers and sample information of the RNA-seq data used in this study. Table S20. Accession numbers and information of the 85 wild barley and 133 landrace accessions.