Additional file 3: of Genetic diversity of avocado (Persea americana Mill.) germplasm using pooled sequencing

Table S3. A list of single nucleotide polymorphisms (SNPs) in avocado transcriptome. Header descriptions: Contig – mRNA contig ID; Position – SNP position; Ref allele – Allele call on the reference contig; Alt allele – Allele call which is different from the reference allele; Guatemalan coverage – Reads’ depth of the Guatemalan pool sequencing; Guatemalan alt prop – proportion of the alternative allele; Mexican coverage – Reads’ depth of the Mexican pool sequencing; Mexican coverage – Reads’ depth of the Mexican pool sequencing; WestIndian coverage – Reads’ depth of the WestIndian pool sequencing; WestIndian alt prop – proportion of the alternative allele; Guatemalan – Guatemalan polymorphism call; Mexican – Mexican polymorphism call; WestIndian – WestIndian polymorphism call; Contig sequence – Sequence of the contig; Polymorphism call description: AA – homozygous to reference allele; BB – homozygous to alternative allele; AB - heterozygous (XLSX 50424 kb)

表S3. 鳄梨转录组单核苷酸多态性（single nucleotide polymorphisms, SNPs）列表。表头说明：Contig：mRNA重叠群ID；Position：SNP位点；Ref allele：参考重叠群上的等位基因分型；Alt allele：与参考等位基因不同的替代等位基因分型；Guatemalan coverage：危地马拉混合样本池测序深度；Guatemalan alt prop：替代等位基因占比；Mexican coverage：墨西哥混合样本池测序深度；Mexican coverage：墨西哥混合样本池测序深度；WestIndian coverage：西印度混合样本池测序深度；WestIndian alt prop：替代等位基因占比；Guatemalan：危地马拉样本多态性分型结果；Mexican：墨西哥样本多态性分型结果；WestIndian：西印度样本多态性分型结果；Contig sequence：重叠群核苷酸序列。多态性分型说明：AA为参考等位基因纯合型；BB为替代等位基因纯合型；AB为杂合型（XLSX 50424 KB）