Additional file 4: of Transcriptome, proteome and draft genome of Euglena gracilis

Table S3. Analysis of GO term frequency, domains and large orthogroup architecture. Sheet 1: GO terms in orthogroups. The sheet has two subtables. In one the GO terms represented above 5% in each orthogroup are shown - all other GO terms with less than 5% frequency have been omitted as the numbers of sequences included are very small. The second shows the number of annotated and non-annotated sequences of each taxonomic group selected. Yellow highlight shows the GO terms of interest belonging to molecular process that are analyzed in this study. Sheet 2: Conserved domains from NCBI database (CDD) detected in those sequences with the GO terms of interest highlighted in sheet 1. Output provided by CDD searches. For the sequence identifiers, note that first field separated with “_”, represents the taxonomic group to which it belongs. Sheet 3: Incidence of conserved domains detected in CDD searches and orthogroups. This table summarizes the output of the CDD searches. Gray highlight represents the conserved domains in parallel with the respective orthogroup (OG number) of the sequences for which we provide phylogenetic analyses. Sheet 4: Data for annotation of NCIII tree. Trans-membrane domains and conserved domains. Sheet 5: Data for annotation of REC tree. Trans-membrane domains and conserved domains. (XLSX 127 kb)补充表S3：基因本体（Gene Ontology, GO）术语频率、保守结构域与大型直系同源组（orthogroup）架构分析。工作表1：直系同源组（orthogroup）中的GO术语。该工作表包含两个子表：其一展示了每个直系同源组中占比高于5%的GO术语——由于对应序列的数量极少，其余频率低于5%的GO术语均已省略；其二展示了所选定的每个分类群（taxonomic group）的注释序列与未注释序列的数量。黄色高亮标注了本研究中分析的分子功能类目标注GO术语。工作表2：工作表1中标注了目标GO术语的序列中，从NCBI保守结构域数据库（Conserved Domain Database, CDD）检测到的保守结构域，结果由CDD搜索工具导出。关于序列标识符，需注意：以“_”分隔的第一个字段代表该序列所属的分类群。工作表3：CDD搜索检测到的保守结构域与直系同源组的分布情况。该表格汇总了CDD搜索的结果。灰色高亮标注了与我们提供系统发育分析（phylogenetic analyses）所用序列对应的直系同源组（OG编号）相匹配的保守结构域。工作表4：NCIII系统发育树的注释数据，包含跨膜结构域与保守结构域信息。工作表5：REC系统发育树的注释数据，包含跨膜结构域与保守结构域信息。（XLSX格式，文件大小127 KB）