Data for: Comparative gene expression analysis of differentiated terminal and lateral haustoria of the obligate root parasitic plant Phelipanche ramosa (Orobanchaceae)

R script and count tables for comparative analysis of transcript data of Phelipanche ramosa (WOSR ecotype), organs/tissue: adventitious roots, lateral haustoria, terminal haustorium

- 20230329_BrunLemanWicke_pairwiseComp_DEGanaysis.R: R code for DEG analysis, overrepresentation analysis, and all data/results plots
- GO_terms_description.txt: translation table for GO terms
- enrich_sig_GO.xlsx: Lists of significantly enriched GO terms from DEG analysis, sorted by GO category
- trinotate_annotation_report.xls: functional annotation of the Phelipanche reference transcriptome (OrAe-BC5 build, PPGP: http://ppgp.huck.psu.edu/download.php) used for mapping
- trinotate_report_gene_ontology_with_parents.xls: GO term assignment for unigene annotation of the Phelipanche reference transcriptome build
- rsem.gene.counts.matrix: Read count table from mapping individual datasets to the reference transcriptome build; read counts are given per reference unigene ID

用于分枝列当（Phelipanche ramosa，WOSR生态型）转录组数据比较分析的R脚本与计数表，涉及的器官/组织为：不定根、侧吸器、顶吸器
- 20230329_BrunLemanWicke_pairwiseComp_DEGanaysis.R：用于差异表达基因（Differentially Expressed Gene, DEG）分析、富集分析及所有数据与结果绘图的R代码
- GO_terms_description.txt：基因本体（Gene Ontology, GO）术语描述翻译表
- enrich_sig_GO.xlsx：基于差异表达基因分析得到的显著富集GO术语列表，按GO类别排序
- trinotate_annotation_report.xls：用于比对分析的分枝列当参考转录组（OrAe-BC5构建版本，PPGP：http://ppgp.huck.psu.edu/download.php）的功能注释报告
- trinotate_report_gene_ontology_with_parents.xls：分枝列当参考转录组构建版本的单基因GO术语注释报告（含父术语）
- rsem.gene.counts.matrix：将各独立数据集比对至参考转录组构建版本后得到的读段计数表，读段计数以参考转录组单基因ID为单位给出