S1 Table -

S1A Table. Detailed description of the L. donovani isolates used in this study. S1B Table. Number of total SNPs, non-synonmous SNPs and homozygous non-synonymous SNPs between any pair of L. donovani strains in this study. S1C Table. Sequencing quality and mapping statistics of all 6 sequenced L. donovani genomes in this study. S1D Table. Sequencing quality and mapping statistics of all sequenced L. donovani transcriptomes in this study. S1E Table. Protein attenuation model data, coefficients and p-values. S1F Table. Summary of all cis- and trans- transcripts and proteins of all possible pairwise comparisons between the 6 L. donovani strains in this study. S1G Table. Pooled trans-transcripts from all possible pairwise comparisons between the 6 L. donovani strains in this study. S1H Table. Pooled trans-proteins from all possible pairwise comparisons between the 6 L. donovani strains in this study. S1I Table. Upregulated metacyclogenis markers in STAT growth phase. Output generated by DESeq2.
(XLSX)

S1A表：本研究中使用的杜氏利什曼原虫（Leishmania donovani）分离株详细信息。
S1B表：本研究中任意杜氏利什曼原虫菌株对之间的单核苷酸多态性（Single Nucleotide Polymorphism, SNPs）总数、非同义单核苷酸多态性及纯合非同义单核苷酸多态性的数量。
S1C表：本研究中6个已测序杜氏利什曼原虫基因组的测序质量与比对统计结果。
S1D表：本研究中所有已测序杜氏利什曼原虫转录组的测序质量与比对统计结果。
S1E表：蛋白质衰减模型数据、系数及P值。
S1F表：本研究中6株杜氏利什曼原虫所有可能菌株对之间的顺式（cis-）与反式（trans-）转录本及蛋白质的全部成对比较汇总结果。
S1G表：本研究中6株杜氏利什曼原虫所有可能菌株对比较得到的合并反式转录本集合。
S1H表：本研究中6株杜氏利什曼原虫所有可能菌株对比较得到的合并反式蛋白质集合。
S1I表：STAT生长阶段中上调的循环前鞭毛体标记物，由DESeq2生成的输出结果。
(XLSX)