Supporting data for " Understanding phenotypic plasticity of phytoplankton to changing environments: Interaction and mechanism".

Description of the data uploaded:
This dataset compressed the original data and analysis data (including R script). It is uploaded for fulfilling the partial requirements of the Ph.D. degree corresponding to the thesis submitted by Zhenzhen Li (Ph.D. candidate from the University of Hong Kong).
Data files contain raw data (in .csv file), R script (in .text file), and reference genome sequencing and annotation for the species, Phaeodactylum tricornutum, downloaded from the Ensembl database (in the .text file).
Content list with separate files related to each of the experimental chapters:
Chapter 2: 1_raw data and R script for analyzing TPC of growth rate under varying light conditions; 2_raw data for carrying capacity (K) and photochemical efficiency (FvFm) and R script; 3_raw data and R script for the temperature gradient in experiment design.Chapter 3: raw data and R script for all the parameters under varying nitrogen conditions.Chapter 4: raw data and R script for the growth rate and curve under fluoxetine and temperature treatments.Chapter 5: 1_raw data and R script for the physiological parameters under fluoxetine and temperature treatments; 2_reference genome and annotation of p.t. downloaded from the Ensembl database; 3_raw gene counts and R script for differentially expressed genes (DEGs) analysis; 4_raw data of DEGs and R script for gene set enrichment of the gene ontology analysis (topGO).

上传数据集说明：本数据集对原始数据与分析数据（含R脚本）进行了压缩打包，用于满足香港大学博士研究生李真真提交的博士学位论文的部分研究要求。
数据集包含以下文件：.csv格式的原始数据、.text格式的R脚本，以及从Ensembl数据库下载的三角褐指藻（Phaeodactylum tricornutum）参考基因组测序与注释文件（.text格式）。
各实验章节对应独立文件清单如下：
第2章：1. 不同光照条件下生长速率瞬时光曲线（TPC）分析所用的原始数据与R脚本；2. 承载量（K）与光化学效率（Fv/Fm）的原始数据及R脚本；3. 实验设计中温度梯度相关的原始数据与R脚本。
第3章：不同氮浓度条件下所有测试参数的原始数据与R脚本。
第4章：氟西汀与温度联合处理下生长速率及生长曲线的原始数据与R脚本。
第5章：1. 氟西汀与温度联合处理下生理参数的原始数据与R脚本；2. 从Ensembl数据库下载的三角褐指藻参考基因组及注释文件；3. 差异表达基因（DEGs）分析所需的原始基因计数数据与R脚本；4. 用于基因本体（GO）基因集富集分析（topGO）的差异表达基因原始数据与R脚本。