Additional file 9 of Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

Additional file 9 Table S6: Summary of the annotated sequence ontology classes of SNPs and INDELs. SO terms are described by Ensembl. Total number of high-quality and non-fixed annotated SNPs and INDELs for both assemblies that were annotated using the release 101 annotation files with VEP tool.

补充文件9 表S6：单核苷酸多态性（Single Nucleotide Polymorphism, SNPs）与插入缺失（Insertion-Deletion, INDELs）的注释序列本体（Sequence Ontology, SO）类别汇总。序列本体（SO）术语由Ensembl数据库定义。本汇总统计了两个基因组组装版本中，使用第101版注释文件结合变异效应预测器（Variant Effect Predictor, VEP）工具完成注释的高质量非固定型单核苷酸多态性与插入缺失的总数量。