Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 707795387

Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).

人类大脑新皮层神经元具有多样的形态学、生理学及基因表达特征。我们采用名为Patch-seq的实验技术，可从同一神经元中同时获取上述三类数据模态的检测数据，以此探究人类新皮层神经元类型的基因表达特征与其形态学及电生理学表型之间的对应关系。本数据集集合包含以下类型文件：图像栈（TIFF格式）、图像空间重构文件（.swc格式，单位：微米）、经坐标转换后的重构文件（.swc格式，单位：微米，其y轴垂直向上指向软脑膜表面），以及标记文件（.marker格式，单位：微米），该标记文件用于标注三类节点：树突被截断处（标记值10）、重构过程终止处（标记值20）、与胞体距离最近的组织表面节点（标记值30）。