Raw HMMER output for PLOS Biology Review (McCutcheon et al., 2024)

Raw TBLOUT-format output from HMMER analysis (using hmmsearch).Query: HMMs from TIGRFAMS and Pfam, representing protein families involved in the synthesis and transport of the bacterial cell envelope, including lipid biosynthesis, peptidoglycan biosynthesis, translocation, etc. Also includes HMMs representing protein families involved in translation, inlcuding ribosomal proteins, aminoacyle tRNA synthases, etc.Target: A select set of 85 genomes, representing a diversity of organisms with genomes smaller than 1 Mb (mostly obligate intracellular parasites and symbionts)本数据集为采用hmmsearch工具开展HMMER（隐马尔可夫模型搜索工具）分析所得到的TBLOUT格式原始输出结果。查询集：源自TIGRFAMS与Pfam数据库的隐马尔可夫模型（Hidden Markov Models，HMMs），对应参与细菌细胞壁合成与转运的蛋白质家族，涵盖脂质生物合成、肽聚糖生物合成、转运易位等功能类别；此外还包含对应参与蛋白质翻译过程的蛋白质家族的隐马尔可夫模型，涵盖核糖体蛋白、氨酰-tRNA合成酶等类别。靶标集：精选的85个基因组，涵盖基因组大小小于1 Mb的各类物种，其中绝大多数为专性胞内寄生菌与共生菌。