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Code from: Multitrait successional forest dynamics enable diverse competitive coexistence

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DataCite Commons2020-09-02 更新2024-07-25 收录
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This repository contains all the code used to produce figures in the paper:Falster, D.S., Brännström, Å., Westoby, M. &amp; Dieckmann, U. (2017) Multitrait successional forest dynamics enable diverse competitive coexistence. Proceedings of the National Academy of Sciences USA: doi: 10.1073/pnas.1610206114<br>also available as a preprint atFalster, D.S., Brännström, Å., Westoby, M. &amp; Dieckmann, U. (2015) Multi-trait eco-evolutionary dynamics explain niche diversity and evolved neutrality in forests. bioRxiv, 014605. doi: 10.1101/014605.The code based was also used to generate results ofFalster, D.S., Brännström, Å., Dieckmann, U. &amp; Westoby, M. (2011) Influence of four major plant traits on average height, leaf-area cover, net primary productivity, and biomass density in single-species forests: a theoretical investigation. Journal of Ecology, 99, 148–164. doi: 10.1111/j.1365-2745.2010.01735.xThe main simulation tool is written in C++ while figures are generated using R. All code is released under the GNU GENERAL PUBLIC LICENSE (a requirement of using the GNU Scientific Library).Please note, this code is supplied so that readers can reproduce the results of the published analysis, if that is desired. But it is not intended for use by others. If you are interested in running this type of analysis, please note that no support is given for use of this code. Instead checkout the plant package for an improved implementation of trait evolution in size- and patch-structured metacommuntiies.This repository contains two zip files:- `multi_trait_succession-c1.1.zip` contains code to fully reproduce figures from the 2017 paper, including running simulations.<br>- `output.zip` contains the simulation results used to generate figures from the 2017 paper.For further information please see the file `README.md`.

本仓库包含用于复现下述论文中所有图表的代码:Falster, D.S.、Brännström, Å.、Westoby, M. 与 Dieckmann, U.(2017)《多性状演替森林动态促成多样的竞争共存》,发表于《美国国家科学院院刊》(Proceedings of the National Academy of Sciences USA),DOI:10.1073/pnas.1610206114。 该研究另可作为预印本获取:Falster, D.S.、Brännström, Å.、Westoby, M. 与 Dieckmann, U.(2015)《多性状生态进化动态解释森林中的生态位多样性与演化中性》,发布于bioRxiv,编号014605,DOI:10.1101/014605。 本仓库的代码库还可用于生成Falster等人2011年的研究结果:《四种主要植物性状对单优林平均树高、叶面积盖度、净初级生产力及生物量密度的影响:一项理论研究》,发表于《Journal of Ecology》第99卷,第148–164页,DOI:10.1111/j.1365-2745.2010.01735.x。 本项目的核心模拟工具采用C++编写,图表生成则使用R语言。 所有代码均遵循GNU通用公共许可证(GNU General Public License)发布,此为使用GNU科学库(GNU Scientific Library)的强制要求。 请注意,本仓库提供代码仅为方便有需求的读者复现已发表的分析结果,并非面向其他使用者开放。若您有意开展此类分析,请注意本代码不提供任何使用支持。推荐您使用`plant`包,该包针对大小与斑块结构化集合群落中的性状进化实现了更优化的版本。 本仓库包含两个压缩文件: - `multi_trait_succession-c1.1.zip`:包含可完整复现2017年论文图表的代码,涵盖模拟运行流程。 - `output.zip`:包含用于生成2017年论文图表的模拟结果数据。 更多详细信息请参阅`README.md`文件。
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figshare
创建时间:
2017-06-07
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